haploview {genomic} | R Documentation |
Calls the haploview java program.
haploview(a,externalprog="haploview")
a |
A list of type mutatedARG or any other
list that contains values ss , var , a vector of positions
pos and matrix of genetic value d |
externalprog |
{The name (and optionally path) to a shell script that runs the haploview program. }
0 if successful.
You need a working version of haploview that is in the path (or alternatively provide the full path in externalprog).
The haploview file should look something like:
#!/bin/sh
/usr/local/j2sdk1.4.2_07/bin/java -jar /data/programs/haploview/Haploview.jar $@
Ian J. Wilson <I.J.Wilson@ncl.ac.uk>
http://www.broad.mit.edu/mpg/haploview/index.php
data(sim1) haploview(sim1) library(ARG) g <- mutate(simARG(100,1000,0.01),100,"panel(2)") haploview(g)