coal1 | Generate a simple coalsecent tree for one population |
coalmig | Generate trees from the symmetric island model. |
coalsplit | Generate a tree with split times |
cutdown | ~~function to do ... ~~ |
gethapgrp | ~~function to do ... ~~ |
meancoalwithinbetween | Calculate mean coalescence times within and between populations |
meanheight | Calculate the pairwise mean height of a tree. |
mutate | Put mutations on trees. |
plot.inftree | ~~function to do ... ~~ |
plot.poptree | Plot a migration tree. |
plot.STRtree | Plot tree with STR haplotypes |
plot.tree | Plot Genealogical Trees |
rotatetree | Function to rotate nodes |
simlinkedSTR | A Function to simulate linked STR loci from the coalescent |
simtimeroot | ~~function to do ... ~~ |