Simulate Genealogies from the coalescent


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Documentation for package `genealogy' version 0.01

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coal1 Generate a simple coalsecent tree for one population
coalmig Generate trees from the symmetric island model.
coalsplit Generate a tree with split times
cutdown ~~function to do ... ~~
gethapgrp ~~function to do ... ~~
meancoalwithinbetween Calculate mean coalescence times within and between populations
meanheight Calculate the pairwise mean height of a tree.
mutate Put mutations on trees.
plot.inftree ~~function to do ... ~~
plot.poptree Plot a migration tree.
plot.STRtree Plot tree with STR haplotypes
plot.tree Plot Genealogical Trees
rotatetree Function to rotate nodes
simlinkedSTR A Function to simulate linked STR loci from the coalescent
simtimeroot ~~function to do ... ~~